HsaEX6031247 @ hg38
Exon Skipping
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450 family 2 subfamily J member 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr1:59904871-59909960:-
Coord C1 exon
chr1:59909784-59909960
Coord A exon
chr1:59907786-59907927
Coord C2 exon
chr1:59904871-59905058
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCAAACATTGTGTTTTCTAGCAC
3' ss Score
7.35
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCATGGATAATGAAATTCCTGCCTGGACCCCACCAAACTCTCTTCAGCAACTGGAAAAAACTGAAATTGTTTGTTTCTCATATGATTGACAAACACAGAAAGGATTGGAATCCTGCAGAAACAAGAGACTTTATTGATGCTTACCTTAAAGAAATGTCAAAG
Seq A exon
CACACAGGCAATCCTACTTCAAGTTTCCATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTTGCCGGAACCGAGACAACTTCCACAACTCTGCGATGGGCTCTGCTTTATATGGCCCTCTACCCAGAAATCCAAG
Seq C2 exon
AAAAAGTACAAGCTGAGATTGACAGAGTGATTGGCCAGGGGCAGCAGCCGAGCACAGCCGCCCGGGAGTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGAATGGGCAACATCATCCCCCTGAACGTTCCCAGGGAAGTGACAGTTGATACCACTTTGGCTGGGTACCACCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716-'12-12,'12-10,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.323
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCACCAAACTCTCTT
R:
GCACCTCATGGATGACAGCAT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains