RnoEX0025913 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115077277-115087047:-
Coord C1 exon
chr5:115086871-115087047
Coord A exon
chr5:115084329-115084420
Coord C2 exon
chr5:115077277-115077464
Length
92 bp
Sequences
Splice sites
3' ss Seq
AAAGAAAACCTCATCTACAGCAC
3' ss Score
1.87
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCAACCATAATTAAATATCTTCCTGGATCACATCAAACAGTTTTGAGAAACTGGGAAAAACTGAAATTGTTTATTTCCTGTATGATGGACAGTCACCAGAAAGACTGGAACCCTGACGAACCAAGAGATTTCATTGATGCTTTCCTTACAGAAATGGCAAAG
Seq A exon
CACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACATCTAACATACTGCGCTGGTCTCTGCTCTACATAACTACAAACCCAGAAGTACAAG
Seq C2 exon
AAAAAGTACACTCTGAGATCGACAGAGTAATTGGCCATAGGAGACAGCCAAGCACAGGTGACCGAGATGCCATGCCCTACACCAATGCTGTCATCCATGAGGTTCTGAGGATGGGCAACATCATCCCCTTGAATGTTCCCAGGGAAATGACAGCTGATAGCACACTGGCTGGATTCCACCTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-'25-29,'25-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.349
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACCCTGACGAACCAAG
R:
TGCCCATCCTCAGAACCTCAT
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]