GgaEX1003806 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25587406-25597365:-
Coord C1 exon
chr8:25597177-25597365
Coord A exon
chr8:25588052-25588184
Coord C2 exon
chr8:25587406-25587593
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAACACTTCATTTTCTGAAGCCC
3' ss Score
3.72
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAAGAGAAAGCCGAAGGACTTCCCCCCCGGTCCTTTTTCCTTCCCTTTCCTGGGAAACATGGAATTTATCATTGCGAAAGACCCCGTGGCTGTGACAGAAAAG
Seq A exon
CCCGACAGCAGTGATTTCTGTGAGGATAACCTGGTGTCGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATTCGCTGGGCCCTGCTGTTTATGGCCATGTATCCAGAAATTCAAG
Seq C2 exon
CCCGTGTGCAAGCTGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCGTCCCTGGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGCATTGAGACTGACAGTGAAAGACACAGTCTTGGCTGGTTTCCGGGTATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.8=41.3)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATCTCCCTGCAGATG
R:
GGCATGTTGTTCCTGTCCTCC
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]