GgaEX1003805 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25589817-25597365:-
Coord C1 exon
chr8:25597177-25597365
Coord A exon
chr8:25596491-25596653
Coord C2 exon
chr8:25589817-25589977
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTATTTACCTCATCCCCAGTTT
3' ss Score
6.94
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAAGAGAAAGCCGAAGGACTTCCCCCCCGGTCCTTTTTCCTTCCCTTTCCTGGGAAACATGGAATTTATCATTGCGAAAGACCCCGTGGCTGTGACAGAAAAG
Seq A exon
TTTATTGAAAAACATGGAGACATCTTTAGCACACAAGTGGGCAGCATGTCATTTGTGATCGTAAATGGGCTGCCACTGATCAAAGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCGGAATTTCCTATAAATACAGAATTCCTCAACAAATTTG
Seq C2 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACGTCATCTGCTCCATCACCTTTGGCAATAGGTTTGAGTACCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGGGAAGATAATGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634_MULTIEX1-1/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.8=41.3)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATCTCCCTGCAGATG
R:
TTGCCAAAGGTGATGGAGCAG
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]