GgaINT1002459 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25596491-25597365:-
Coord C1 exon
chr8:25597177-25597365
Coord A exon
chr8:25596654-25597176
Coord C2 exon
chr8:25596491-25596653
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTATTTACCTCATCCCCAGTTT
3' ss Score
6.94
Exon sequences
Seq C1 exon
ATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAAGAGAAAGCCGAAGGACTTCCCCCCCGGTCCTTTTTCCTTCCCTTTCCTGGGAAACATGGAATTTATCATTGCGAAAGACCCCGTGGCTGTGACAGAAAAG
Seq A exon
GTAAGGAGATCCAACCCAAGCAGTGCAAACTCAACAATGCTCAAACTTCATGGTCCTCAGAGGGCTTTCTCGGTGTGTGCTGTTGTTTGGCCTTGGATCAGAAGGTAATGTGCATGATGTTTGCCTTGCAGTGCAGAACAACGTCCTTTGGGCAAAGGGCATGGCACAACGCCATGATTTTGATTGCAGCTGTAGGTGGTTCTGATGGGAAGGGCTTCTATGAAAGGAGTTAAACAACATCAGGAAAAGGTTTTCTCAACTGAGTCTCGCAAAGCCTGGAGAGGGCAGCCTGGAGGGTTTTACCCCATCTTCAGAACACTGATAGAAGAAATCAGGAACATGACTGCATGCAATCAAGCCAAATCTTGTGCAATTACACTAACGCTTCTCCTACGTTTTCTTCCTAATCCAGTGCAAGTGAAACCATTCCGCACTGTGAGTGCAGGATACCAGGGCTTTCCCTCTCCTAGCAGAAAAAGTCATTGCAAATCAATCCTGGTTTATTTATTTACCTCATCCCCAG
Seq C2 exon
TTTATTGAAAAACATGGAGACATCTTTAGCACACAAGTGGGCAGCATGTCATTTGTGATCGTAAATGGGCTGCCACTGATCAAAGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCGGAATTTCCTATAAATACAGAATTCCTCAACAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634:ENSGALT00000017753:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.8=41.3)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCGCTTCCTCTGGG
R:
CTGTATTTATAGGAAATTCCGGGCGA
Band lengths:
334-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]