MmuEX7002405 @ mm10
Exon Skipping
Gene
ENSMUSG00000082932 | Cyp2j8
Description
cytochrome P450, family 2, subfamily j, polypeptide 8 [Source:MGI Symbol;Acc:MGI:2449817]
Coordinates
chr4:96470484-96479189:-
Coord C1 exon
chr4:96479013-96479189
Coord A exon
chr4:96475416-96475557
Coord C2 exon
chr4:96470484-96470671
Length
142 bp
Sequences
Splice sites
3' ss Seq
AAAATGCAATGTCTTTACAGTAC
3' ss Score
4.68
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCATCTATATTTAAATATCTTCCTGGACCACATCAAAAACTTTTCAGCAACTGGGAAAAACTGAAATTGTTTTTTTCCCATGTGATGGACAGTCACCGGAAAGATTGGAATCCTTCTGCACCAAGAGACTTCATTGATGCTTTCCTTACAGAAATGGCAAAG
Seq A exon
TACTCAGACAAGACAACTACAAGTTTTAATGAAGAAAATCTCATCTGCACCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCCACAGCACTGCGTTGGGCTCTGCTCTACATAACTGTTAATCCAGAAGTGCAAG
Seq C2 exon
AAAAAGTACACTCTGAGATTGACAGAGTGATTGGCCAAGGGAGACACCCAACCATAGATGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTACTGAGGATGGGTAACATCATCCCTTTGAATGTTCCCAGGGAAGTAGAAGCTGATATCACACTGGCCGGATTCCACCTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000082932-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGATGGACAGTCACCGG
R:
CGGCCAGTGTGATATCAGCTT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types