BtaEX6017457 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0QW09]
Coordinates
chr3:86536193-86538694:+
Coord C1 exon
chr3:86536193-86536369
Coord A exon
chr3:86538030-86538171
Coord C2 exon
chr3:86538507-86538694
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATAATCACTGTGCTTTCTAGCAT
3' ss Score
6.07
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATATCTTTCCAAGGATAATGAGTTTCCTTCCGGGTCCCCAGCATGCACTCTTTAGTAAATGGGAGAAACTGAAAATGTTTATTGCTGGTGTGGTTGAAAACCACAAGAGAGACTGGAATCCTGCAGAAGCAAGAGACTTCATTGATGCTTATCTGCAGGAAATAGAAAAG
Seq A exon
CATAAGGGCAATGCTACTTCATGTTTCCATGAAGAAAACCTTATCTATAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCAGTGGGGACTGCTCTACATGGCCTTGTATCCTGAAATCCAAG
Seq C2 exon
AAAAAGTCCAAGCTGAGATTGATAGGGTGCTTGGCCAATCTCAGAAACCAAGCATGGCCGCGCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCTGCGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCGCCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013693-'7-11,'7-9,9-11=AN
Average complexity
A_S
Mappability confidence:
67%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTTTCCTTCCGGGTCCC
R:
GATGACAGCGTTGGTGTAGGG
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]