MmuEX1029349 @ mm10
Exon Skipping
Gene
ENSMUSG00000081225 | Cyp2j12
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:96106394-96115693:-
Coord C1 exon
chr4:96115517-96115693
Coord A exon
chr4:96112866-96113007
Coord C2 exon
chr4:96106394-96106581
Length
142 bp
Sequences
Splice sites
3' ss Seq
GATGAAACTGTCTTCTCTAGTAC
3' ss Score
5.05
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCATCCATAATTCAATATGTTCCTGGATCACATCAAACAGTTTTGAGAAACTGGGAAAAACTGAAATTGTTTATTTACCAAATGATGGAGAGTCACCGGAAAGATTGGAATCCTGATGAACCGAGAGACTTCATTGATGCTTTCCTTACAGAAATGTCAAAG
Seq A exon
TACGGAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCAACAGCACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACAACTAACACACTGCGCTGGGCTCTGCTCTACATAACTACAAACCCAGAAGTGCAAG
Seq C2 exon
AGAAAGTACACTCTGAGATTGACAGGGTAATTGGACATGGAAGACAGCCAAGCACAGATGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCTGAGGATGGGCAACATCCTCCCCATGAATGTTCCCAGGGAAGTAACAGCTGATAGCACACTGGCTGGATTCCACCTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.365
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAGAGTCACCGGAAAGA
R:
GCCAGTGTGCTATCAGCTGTT
Band lengths:
249-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types