GgaEX6045023 @ galGal4
Exon Skipping
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25613011-25614413:-
Coord C1 exon
chr8:25614237-25614413
Coord A exon
chr8:25613734-25613875
Coord C2 exon
chr8:25613011-25613198
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTTTTTATGCAAGTGT
3' ss Score
4.15
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
CTGTATAATGCTTTCCCTCTGATAATGAGATGGCTACCAGGGCCCTTCAGGAAGATATTCAGGCACTGGGAGAAACTGCAGCGTTTTGTGAGGGGAGTGATTGCAAAACACAAGGAGGACTTGGACCAGTCTGACTTGGGAGATTACATTGACTGTTACTTAAAGGAAATAGAAAAG
Seq A exon
TGTAAGGGTGACACCAACTCCTATTTCCATGAGGAAAATCTGCTCTGCTCCACACTGGACCTCTTCTTGACTGGGACAGAGACAACAGCAACCGCCATCCGCTGGGCTCTGCTCTACATGGCCGCGTACCCCCACATTCAGG
Seq C2 exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'5-8,'5-6,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.2=100)
A:
PF0006717=p450=FE(10.7=100)
C2:
PF0006717=p450=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTTGTGAGGGGAGTGAT
R:
GTCATTGGTGGACATCCTGGG
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]