BtaEX0000020 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86502665-86504820:+
Coord C1 exon
chr3:86502665-86502814
Coord A exon
chr3:86503070-86503230
Coord C2 exon
chr3:86504644-86504820
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTCTCCTGCCTCCAGGAC
3' ss Score
11.93
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCTTGGTCAGGTCCAATGGCCAGGTATGGAAAGAGCAAAGAAGGTTCACCCTGACAACTCTGAGGAACTTCGGTTTGGGAAGGAAGAGCTTAGAGGAACGCATTCAGGAAGAGGTCACCTACCTCATCCAGGCAATAGGAGAGGAGAACG
Seq A exon
GACAGCCTTTTGACCCTCACTTCATAATCAACAATGCTGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGGTTTGACTACAAGGATGATCAGTTCCAGGAGCTGCTGAGGCTGCTGGATGAGATCTTGTGTATTCAGGCATCAGTGTGCTGCCAG
Seq C2 exon
CTCTACAATGCTTTTCCAAGAATAATGAATTTCCTTCCGGGATCCCACCACACTCTCTTTCGTAAATGGGAGAAACTGAAAATGTTTGTTGCTAATGTGATTGAAAACCACAGGAAAGATTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTACCTCCAGGAGATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258-'3-5,'3-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTTGGGAAGGAAGAGCT
R:
TCTCCTGGAGGTAAGCATCAA
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development