RnoEX6022484 @ rn6
Exon Skipping
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119557267-119562285:-
Coord C1 exon
chr5:119562136-119562285
Coord A exon
chr5:119561574-119561734
Coord C2 exon
chr5:119557267-119557443
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTCCCCGTATCCAGGAA
3' ss Score
10.81
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGTCAGACATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTCAGGAATTTTGGCTTGGGAAAGAAGAGCTTAGAGCAGCGCATGCAGGAGGAGGCCCACTACCTCGTGGAAGCCATAAGAGAGGAGAAAG
Seq A exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGAGTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTGCTGGATGAGGTCATGTATTTGGAGACAACAATGATAAGCCAG
Seq C2 exon
CTCTATAATATTTTTCCATGGATAATGAAGTATATTCCTGGATCACATCAAACAGTTTTCAGAAACTGGGAAAAACTGAAATTGTTTGTCTCTTCTATGATCGATGATCACCGGAAAGACTGGAACCCTGAGGAGCCAAGAGACTTCATTGATGCTTTCCTCAAGGAAATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGATGACACTCAGGAA
R:
TCTCTTGGCTCCTCAGGGTTC
Band lengths:
247-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]