DreEX6045093 @ danRer10
Exon Skipping
Gene
ENSDARG00000094057 | cyp2j20
Description
cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
Coordinates
chr20:25712404-25715325:+
Coord C1 exon
chr20:25712404-25712553
Coord A exon
chr20:25712641-25712801
Coord C2 exon
chr20:25715149-25715325
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTATCTCTTTTTGCTGTAGGTC
3' ss Score
11.64
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GTTTAGTGGCTTCCAGTGGATATAAATGGAAGCAGCAGAGGAGATTTGCACTCTCGACTCTTCGAAACTTCGGATTGGGAAAGAAAAACTTGGAGCCATCCATCAATCTCGAAAGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAGG
Seq A exon
GTCAACCCTTTGACCCTCGCTTACTTCTGAACAACGCTGTATCAAATGTGATCTGTGCACTTGTGTTTGGTAATCGCTTTGACTACAGTGACCATAAATTTCAGACTCTGCTGAAGAACATCAACGAGACTGTGCATCTGGAAGGAGGCATCTGCGCTCAA
Seq C2 exon
CTTTATAACATGCTGCCATGGCTCATGAGATTGCTGCCTGGACCACACAAAAGGATTATTGCTCTGTGGGGGAAGTTGATTGAGTTTGTTGGAGAGAAGGTGAATGAACACAAAGTGGATCATGATCCACTGAATCCTCGAGACTACATTGACTGCTTTCTAGATGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094057-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAGAGGAGATTTGCAC
R:
TGATCCACTTTGTGTTCATTCACCT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]