RnoEX6033239 @ rn6
Exon Skipping
Gene
ENSRNOG00000029179 | Cyp2d1
Description
cytochrome P450, family 2, subfamily d, polypeptide 1 [Source:RGD Symbol;Acc:708427]
Coordinates
chr7:123636005-123637225:-
Coord C1 exon
chr7:123637073-123637225
Coord A exon
chr7:123636831-123636991
Coord C2 exon
chr7:123636005-123636181
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTTGCATCTCCACTCCCCAGGGC
3' ss Score
8.28
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTGTGGTGCTTGCACCTTACGGGCCTGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCCACCCTGCGCAACTTCGGTGTGGGCAAGAAATCCCTGGAGCAGTGGGTGACAGACGAGGCCAGCCACCTCTGTGATGCCCTCACCGCTGAGGCAG
Seq A exon
GGCGGCCCCTCGATCCTTACACCCTCCTGAACAAGGCTGTGTGCAATGTAATTGCATCTCTCATTTATGCCCGCCGCTTCGACTATGGAGACCCTGATTTCATCAAGGTGCTAAAAATATTGAAAGAAAGCATGGGAGAGCAAACTGGCTTGTTTCCTGAG
Seq C2 exon
GTTTTGAACATGTTCCCAGTTCTCCTGCGCATCCCAGGGTTAGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCATGGTGGATAACCTGGTGACTGAGCACAAGAAGACTTGGGACCCTGACCAGCCACCTCGAGACCTGACTGATGCCTTTCTGGCTGAGATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029179-'6-4,'6-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCGATTCTCTGTGTCCA
R:
GGTCAGGGTCCCAAGTCTTCT
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]