GgaEX6001896 @ galGal3
Exon Skipping
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51294494-51296279:+
Coord C1 exon
chr1:51294494-51294646
Coord A exon
chr1:51295818-51295978
Coord C2 exon
chr1:51296106-51296279
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATATCCATTTCCATTTTTAGGTC
3' ss Score
11.66
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGCTTGTTTTGGCAAGATATGGACATCTCTGGAAAGAGCTAAGGAAATTCACGCTCACTACCCTGAGGAATTTTGGGATGGGAAAGAAGTCCTTGGAAGAGCGAGTGACTGAGGAAGCAGGATTTTTGTGCTCTGCAATCAGTTCTGAAGGAG
Seq A exon
GTCATCCTTTTGATCCACGTTTTCTTGTAAATAATGCAGTCTGCAATGTGATCTGCACCATTACCTATGGAGAGCGTTTCGACTATGGAGACAAGACATTCAAGAAGCTGTTAACTTTGTTTGAAAACTCTCTAAATGAAGAAGCTGGATTCCTGCCTCAG
Seq C2 exon
CTTCTTAATGTGGCACCTGTTTTGTTGCGCATCCCTGGACTGCCACAGAAGATCTTTCCGTGCCAAAAGGCATACGTAGACTTCACACAAATGCTCATAGATAAGCACAAGGAGACCTGGAACCCTGCTTACATCCGAGACTTCACTGATGCATTTTTAAAGGAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTCACTACCCTGAGGAA
R:
TCGGATGTAAGCAGGGTTCCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]