MmuEX6094428 @ mm10
Exon Skipping
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96531632-96536145:-
Coord C1 exon
chr4:96535996-96536145
Coord A exon
chr4:96535446-96535606
Coord C2 exon
chr4:96531632-96531808
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTCCCCCTATCCAGGAA
3' ss Score
11.52
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGCCAAATATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGGAGCGCATGCAGGAGGAGGCCTCCCACCTAGTGGAAGCCATAAGAGAGGAGGAAG
Seq A exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGACTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTACTGGACGAGGTTATGTATTTGGAGACAACAATGATTAGTCAG
Seq C2 exon
CTGTATAATATTTTTCCATGGATAATGAAATACATCCCTGGATCACATCAAAAAGTTTTCAGAAACTGGGAAAAACTGAAATTGTTTGTCTCTTGTATGATTGATGATCACCGGAAAGACTGGAACCCCGATGAACCAAGAGACTTCATTGATGCTTTCCTCAAGGAAATGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.7=100)
C2:
PF0006717=p450=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGATGACACTGAGGAA
R:
CTTGGTTCATCGGGGTTCCAG
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types