BtaEX0001181 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86420515-86433385:+
Coord C1 exon
chr3:86420515-86420702
Coord A exon
chr3:86426801-86426939
Coord C2 exon
chr3:86433196-86433385
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTCTGCCTTCTCCAGGGT
3' ss Score
10.78
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AGAAAGTCCAAGCTGAAATCGATAAGGTGCTTGGTGAGTCACAACAACCAAGCACGGCCGCTCGCGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGCCCAAG
Seq A exon
GGTACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACATTCAATCCGGAGCATTTTCTAGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTCTGCCTTTTTCAATAG
Seq C2 exon
GAAAGAGGATGTGCCTTGGAGAACAATTGGCCAGAACTGAGTTGTTTATTTTTTTTACCTCACTTCTGCAAAAATTTACCTTCAGGCCTCCAGACAATGAAGAGTTAAGCCTGAAGTTCAGAATGGGCTTGACCCTCTCCCCAGTCAGCCATTGCCTCTGTGCTGTTCCTCGGGCCTGAAGTTGTTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085-'8-13,'8-11,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.174 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(17.5=100)
A:
PF0006717=p450=FE(12.1=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACCAACGCTGTCATCC
R:
AGCCCATTCTGAACTTCAGGC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development