GgaEX6045024 @ galGal3
Exon Skipping
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27486161-27488186:-
Coord C1 exon
chr8:27487999-27488186
Coord A exon
chr8:27486933-27487071
Coord C2 exon
chr8:27486161-27486333
Length
139 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCCCACCCTTGCAGGGT
3' ss Score
9.24
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
Seq A exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
Seq C2 exon
GCAAGCGTGCCTGTCCTGGTGAGCAGCTGGCCAGGACTGAGCTCTTCATCTTCTTCACTGCCCTGCTGCAGAAGTTCACCTTCCAGGCTCCATCTGCCACCGTGCTGAGCTTTGCCTTCACGCTCAGCCTCACGCGCTGCCCCAAGCCCTTCCAGCTCTGCGCCCTGCCTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'8-8,'8-7,9-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.0=100)
C2:
PF0006717=p450=PD(11.7=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTGTGATTGGCCAGTG
R:
AAGGTGAACTTCTGCAGCAGG
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]