HsaEX6031248 @ hg19
Exon Skipping
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:2634]
Coordinates
chr1:60358980-60370188:-
Coord C1 exon
chr1:60370038-60370188
Coord A exon
chr1:60366637-60366775
Coord C2 exon
chr1:60358980-60359501
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCTGCTTTCTCTAGGGT
3' ss Score
10.69
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AACATCTCACCAGACTAGGGATCTGCCAAACTTTGGGAAATTCTGCTTCATGAACCTGGGGTTCTAGAATGCTAAAATGTGAAAGGACATTTAAGACCACCTGGGACAACATCATATTAATGCTGGTGTTTTTAACATAATATCCCCACAG
Seq A exon
GGTACCATGATCCTGACCAATTTGACGGCGCTGCACAGGGACCCCACAGAGTGGGCCACCCCTGACACATTCAATCCGGACCATTTTCTGGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTATGCCTTTCTCAATAG
Seq C2 exon
GAAAGCGGGCATGCCTCGGAGAACAGTTGGCCAGGACTGAGCTGTTTATTTTCTTCACTTCCCTTATGCAAAAATTTACCTTCAGGCCCCCAAACAATGAGAAGCTGAGCCTGAAGTTTAGAATGGGTATCACCATTTCCCCAGTCAGTCACCGCCTCTGCGCTGTTCCTCAGGTGTAATATTGTTAAGAAAGAAAGGGGCAAGGAAAGTAAGAAGACATGGCACGTGTTCTGAAACCACTGGTGTCTGCTCAGATGTGTTGGGACAAAATGAAAGTGACTTTCAAGAAAGATCAGAGGAATTTGACTCAGAGAAAACTAGATCCAAATCCCAGCTCTACTGTCTCGTCCGAATTAGCCTTGGGAAAATCATTTATATGCTAAATAATTTACCTTTTTATCTAGGAGATGAAAAGAGGATAATGTTTCCTTCCATAAAGAAAGTTCTTGTAAGAATCAAAAGAAATGGTGAGCTTTAAGTGGTTTGTAAACCATAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716-'9-10,'9-9,11-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.6=33.3)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(11.9=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGACTAGGGATCTGCCA
R:
AGCTTCTCATTGTTTGGGGGC
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)