RnoEX0025927 @ rn6
Exon Skipping
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119546461-119552441:-
Coord C1 exon
chr5:119552254-119552441
Coord A exon
chr5:119550086-119550224
Coord C2 exon
chr5:119546461-119547273
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGCTGTTATTTCTAGGGT
3' ss Score
10.12
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAAAGTACAGGCAGAGATTGACAGAGTCATTGGCCAGAAGAGGGCAGCAAGCCTGGCCGATCGAGAATCCATGCCCTATACCAATGCCGTCATCCATGAGGTGCAGAGGATGGGCAACATCATCCCCCTGAATGTTCCCAGGGAAGTAGCAATGGATACCACTTTGAATGGATTCCACCTGCCAAAG
Seq A exon
GGTACCATGGTTCTAACCAACCTAACTGCACTGCACAGGGACCCAAAAGAGTGGGCCACCCCAGATGTGTTCAACCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCTTTTCTGCCATTCTCAATGG
Seq C2 exon
GAAAGAGAGCTTGCCTTGGAGAACAACTGGCCAGGTCTGAACTGTTCATTTTCTTCACTTCTCTTATGCAAAAATTTACCTTCAAGCCCCCAACCAATGAGAAGCTGAGCCTGAAGTTCAGAAATGGCCTCACACTTTCTCCAGTCACGCACCGCATCTGTGCTGTCCCTAGAGAATGATGCTGGAGAAGCAAAGAGAAAAAGGAAGATGTGGTGTATGCCCTGAAGCATCTGGGCTTGCTCAAGTGAGAGGAGAAGGTGTTACGGAATGAATGTGATTCGAGCAATATTGAAGAAATTTGACTTAGAAAATTGAAGCAAACTCCTAGAATGATGGCCTCTTGATTTGGTGGTGGGCACATCACTTATGAGCTCAGTGGCGTGCCTTTGCATCTAAAAGTTAGGAGGACAATGGTGATTCTTCCTATAAACAAGGTGGATTAGTGAATTTAAAATGAATTAAACATCAAAATTAAAACTATAATTATTATTTTAAAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.5=100)
A:
PF0006717=p450=FE(10.7=100)
C2:
PF0006717=p450=PD(12.6=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCGATCGAGAATCCATG
R:
CAGCTTCTCATTGGTTGGGGG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]