GgaEX6046399 @ galGal3
Exon Skipping
Gene
ENSGALG00000020738 | F1NCU2_CHICK
Description
NA
Coordinates
chr9:16778782-16779981:-
Coord C1 exon
chr9:16779794-16779981
Coord A exon
chr9:16779502-16779643
Coord C2 exon
chr9:16778782-16779159
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACAAATGTACTCTTTTTCAGGAC
3' ss Score
9.99
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
AGAAAGTCCATAAGGAGCTGGATGCTGTCCTGGGCAGTTCCCGTTTAATTTGCTACAAAGACAGAAAAAACTTGCCATACACAAATGCTGTGATTCATGAAATCCAACGATACAGTAATATTGTCTTAATTGCACTTCCCAGATATACTGTGAAGGACACGGAGCTGCTGGGATTTCCTATTCCAAAG
Seq A exon
GACACCATCGTTCTGGTAAATATCGACTCTGTTCTGTCTGATCCTGAAAAATGGGAGACACCTGATCAGTTCAACCCGGGACACTTCCTCGATAAAGATGGAAACTTTGTACACAGAGAAGCATTCCTACCATTCTCAATAG
Seq C2 exon
GGCACCGTGCATGCATGGGGGAACTGCTGGCAAGGCTGGAGCTCTTCATCATCTTCTGCACCCTGCTGCAGGCGTTCACCTTCACCCTGCCAGATGGAGTGAACGAAGTCAGCACCAAGTTTGTTTTTTCAAGTACAAAGAAGCCACCTCCACACCAGATCTGTGCCATTCCTCGGTAGGAAACAGTGTCACACAGATTCAGGGAAGACTTAACTCGGTGTGATTCTGCATGTGGAAACTTACTGTGTCTTAAGATTTTTGCTTTCTTCTTGATTTGGTCAGTTACTGCACTGAAAAATGCTTTTCGGACAGTTGCATCCTGTAAAGTCAATATTTTGTTCTTGTTATTAACGCTTGGTATATTTGTCCCAGTGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020738-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.1=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATAAGGAGCTGGATGC
R:
GCAGGGTGCAGAAGATGATGA
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]