BtaEX0000019 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86507884-86519705:+
Coord C1 exon
chr3:86507884-86508071
Coord A exon
chr3:86514359-86514497
Coord C2 exon
chr3:86519198-86519705
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTCTGCCTTCTCCAGGGC
3' ss Score
11.26
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
Seq A exon
GGCACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACGTTCAATCCAGAGCATTTTCTGGAAAATGGACAGTTTAAGAAAAGGGAATCCTTTCTGCCTTTCTCAATAG
Seq C2 exon
GAAAGCGGATGTGCCTTGGAGAACAATTGGCCAGGACAGAGTTGTTTATTTTCTTTACTTCACTTCTGCAAAAATTTACCTTCAGGCCTCCAGAGAATGAGAAGCTGAGCCTAAAGTTTAGAGAAAGCCTGACCAGCTCCCCAGCCAGCTACCGCCTCTGTGCTATTCCTCGGGCCTGAAATTGTCCAGAGAGGGAGGAGAAGGAAAGAAAGAAGAATGGGCCTGTTCCCCTCAAGATAGAGCACATGCTCAGGAGTGAGGGAGCAGCACTCAGTGCCTCTAGGACAGGTCACAGGAACTGGACTCAGAGGAAACTGAATCCAAACCCCAGCTTAACCGTCTCCAGTGGGGCCTTGGGCAAATCAGTTATGTTGTGAGTGATTTCATTTTCATCTGGGAAATAGAAGGTGGACAATGATTTCTTCTCTAAAGCAAAAACTAATGCAAAGATCAAAGGAAATTAAGGGCTTTAAATGGCTTGGAAACCATAAAGCACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(11.9=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACATCGTCCCCATGAAC
R:
GAATAGCACAGAGGCGGTAGC
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development