DreEX0025448 @ danRer10
Exon Skipping
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25616169-25618084:-
Coord C1 exon
chr20:25617897-25618084
Coord A exon
chr20:25617033-25617174
Coord C2 exon
chr20:25616169-25616529
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTACATTATTTCAACCAGGGC
3' ss Score
7.24
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAAAGGTCCAGGAGGAGATCGACAGAGTGATTGGAAACTCAAGAGAGCCAAGTATAGCCGACAAACCCAACATGCCCTACACAGAGGCTGTCATCCATGAGATCATGAGATTTGGAGATGTTATACCATTGAATGGATTGCGAGTGGCTGCAAGAGACACAACCCTTGGAGAATGCTTCATCCCAAAG
Seq A exon
GGCACAACCGTTTTACCTATACTGCACTCTGTTCTCTTTGATGAAAACGAATGGGAGACACCCTACAAGTTCAATCCTGGCCACTTTTTAGACAAAGAGGGCAAGTTTGTAAGGCGAGATGCATTTATGCCCTTTTCTGCAG
Seq C2 exon
GAAAGAGGGTCTGTTTGGGGGAGCAGATCGCCAGAATTGAACTCTTCCTATTTTTTGTCAGTTTGTTCCGCAAATTCAGATTTTCAGCCACAGAGGGAGAGAAACTCAACATGGATGGAGTGATTGGAATAACACGCACTCCACACCCGTTCAAGATCTGTGCAACAGCACGTTGAGACAAATCTGACTATTTTTATTAGGAATTAATGAACAATATTTATAGTCAATTACAGTACATTATATGTATCTAACATGACACTACTGGCAATTTTTATTTCACATTTTGGGCTTTTTGACTTCATAAATTGTTTTTCTTTTCCTGGCTTTATTGAAAATAAACACCTAAAAAAGTGTTTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(11.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGAGGCTGTCATCCATG
R:
GGGTGTGGAGTGCGTGTTATT
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]