MmuEX0013350 @ mm10
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:96027534-96056960:-
Coord C1 exon
chr4:96056773-96056960
Coord A exon
chr4:96056558-96056696
Coord C2 exon
chr4:96027534-96027843
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTAACTTTCCCTAGCGG
3' ss Score
8.08
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAATGTACAGGCTGAAATTGACCGAGTGATTGGCCAGTCGAAGCATCCCAGCCTGGCTGACAGAGACTCCATGCCCTACACCAATGCTGTTGTCCATGAAATTCTGAGAATGGGCAATAGTGTCCCTCTGAATATTCCCAGGGAAGTGGCAGTTGACACTACACTGGCTGGATTTCACTTGCCAAAG
Seq A exon
CGGTCTGTGGTCATGACCAATTTGACTGCACTGCATATGGACCCTAAAGAATGGGCCACCCCAGACATCTTCAATCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCTTTTCTGCCATTTTCAATGG
Seq C2 exon
GCAGTTTGATGTTTTCCTTACAAAGCTCATAGAACAGCATGTGCTTTCTACCAACTAGCAGGAGAGTGGCAAACTCTTTTGGTTGGCTAAACAAGACCTGAAGAAAAGGAAACGGACAAAAAGAACATGAAATGGAGAAATCTCACGGGGCCTCAACACTAGACAACTGGGGACTGTGGAGAGAGGGAAAAATGGTCTTCCTGAGGGTACAGTTCTCCCCAATTGCTTATCCAATATCTAGAGGTCAGTCTTGAGGTCATATACATATAGGGCACATCACCCAAAATGAACAGGTACTATTTATATATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(1.3=50.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCAGGGAAGTGGCAGT
R:
TTTCCCTCTCTCCACAGTCCC
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types