MmuEX0013350 @ mm9
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:95709351-95723651:-
Coord C1 exon
chr4:95723464-95723651
Coord A exon
chr4:95723249-95723387
Coord C2 exon
chr4:95709351-95712319
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTAACTTTCCCTAGCGG
3' ss Score
8.08
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAATGTACAGGCTGAAATTGACCGAGTGATTGGCCAGTCGAAGCATCCCAGCCTGGCTGACAGAGACTCCATGCCCTACACCAATGCTGTTGTCCATGAAATTCTGAGAATGGGCAATAGTGTCCCTCTGAATATTCCCAGGGAAGTGGCAGTTGACACTACACTGGCTGGATTTCACTTGCCAAAG
Seq A exon
CGGTCTGTGGTCATGACCAATTTGACTGCACTGCATATGGACCCTAAAGAATGGGCCACCCCAGACATCTTCAATCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCTTTTCTGCCATTTTCAATGG
Seq C2 exon
GAAAGCGAGCTTGCCTCGGAGAACAATTGGCCAGGTCTGAGCTCTTTATTTTCTTCACTGCCCTTGTGCAAAAATTTACCTTCAAGCCACCAGCCAATGAGAACCTGAGTCTGAAGTTCAGATTAGGCATCACCATTTCCCCAGTCAGCTACCGCATCGGTGCTGTCCCTAGACAATGATGCTGGAGAAGAAAAGGAGAGCAGAAAGAAGTGAAGAATGCACTGAGTCACTGAGCCACTGCCCATATATGGAGGGCAAGAAGGAAGGTGACGGGGAAAGTTGGAAGGAATTAGACTAAGGTCAGTGGACCTATATTCTGGACTGCTGAGACCTCCAAATTGGTTGTGGATAAATCACTTACATGCTCAATGATAAATCTTTTCATCTACAACTGCAAAGAGAACTGTGGTTCCTCCTTGTAAAAAGTGCTTGTAAGCAGGAAATGATGGTATACCAACCGCATAGAAATCACTGTTATATCATAGAATTATACCTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-'6-9,'6-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(11.8=90.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGGCCAGTCGAAGCATC
R:
GGCTGGTGGCTTGAAGGTAAA
Band lengths:
256-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: