RnoEX0025917 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115031506-115077464:-
Coord C1 exon
chr5:115077277-115077464
Coord A exon
chr5:115076424-115076562
Coord C2 exon
chr5:115031506-115031682
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGCTTTCTCCTTTAGGGC
3' ss Score
12.61
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAAAGTACACTCTGAGATCGACAGAGTAATTGGCCATAGGAGACAGCCAAGCACAGGTGACCGAGATGCCATGCCCTACACCAATGCTGTCATCCATGAGGTTCTGAGGATGGGCAACATCATCCCCTTGAATGTTCCCAGGGAAATGACAGCTGATAGCACACTGGCTGGATTCCACCTGCCTAAG
Seq A exon
GGCACCACAATTCTGACCAATTTGACTGGTCTTCACAGGGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
Seq C2 exon
CTCTACAACATGTTCCCATGGATAATCAAACATCTCCCAGGACAACACCAAACCTTGTTGGCTACCTGGGGAAAACTGAAATCATATATTGCTGATATCATTGAAAATCACCGCGAAGACTGGAACCCTGCTGAGCCGAGAGACTTCATTGATGCTTTTCTCAATGAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-12/18=11-15
Average complexity
C2*
Mappability confidence:
85%=100=86%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=0.193 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCATGCCCTACACCAATG
R:
GTTCCAGTCTTCGCGGTGATT
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]