GgaEX6045024 @ galGal4
Exon Skipping
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25609984-25613198:-
Coord C1 exon
chr8:25613011-25613198
Coord A exon
chr8:25611945-25612083
Coord C2 exon
chr8:25609984-25611345
Length
139 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCCCACCCTTGCAGGGT
3' ss Score
9.24
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
Seq A exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
Seq C2 exon
GCAAGCGTGCCTGTCCTGGTGAGCAGCTGGCCAGGACTGAGCTCTTCATCTTCTTCACTGCCCTGCTGCAGAAGTTCACCTTCCAGGCTCCATCTGCCACCGTGCTGAGCTTTGCCTTCACGCTCAGCCTCACGCGCTGCCCCAAGCCCTTCCAGCTCTGCGCCCTGCCTCGCTGCTGAAGGCAAGATGGAAAGCATTCCCTTCTCAGCTGTCCTATTAGGTTACAGGCTGCAGTGCTGGGGCTCCTCACAGCCAGCAGCCTGGCATGGTGTTTGGGCAGTGGGGAGGGCAGGAGGGCTGCATTCTGCACACTGCAATGAGGACAAGCCCTGGGACTCACCCTTGCTCTCCTACTCCTTTCTCTGATCAGTTTGATAAAATACATGAATTCAAAAGCCTTATTACTTCATTTCCACCCTCAGCAACTCTAAGGAAGTGTCTGCCGACTGTAAGTCATGGGCACACTTGTTCTTGCTGTGTCTCTTCTACAGTGGATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'8-10,'8-9,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.2=100)
A:
PF0006717=p450=FE(10.5=100)
C2:
PF0006717=p450=PD(12.3=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACCAATGACACAACCC
R:
GGACAGCTGAGAAGGGAATGC
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]