HsaEX6027105 @ hg38
Exon Skipping
Gene
ENSG00000100197 | CYP2D6
Description
cytochrome P450 family 2 subfamily D member 6 [Source:HGNC Symbol;Acc:HGNC:2625]
Coordinates
chr22:42126499-42127634:-
Coord C1 exon
chr22:42127447-42127634
Coord A exon
chr22:42126851-42126992
Coord C2 exon
chr22:42126499-42126752
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCATCTCCTGCCCAGGGA
3' ss Score
7.34
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GCCGTGTCCAACAGGAGATCGACGACGTGATAGGGCAGGTGCGGCGACCAGAGATGGGTGACCAGGCTCACATGCCCTACACCACTGCCGTGATTCATGAGGTGCAGCGCTTTGGGGACATCGTCCCCCTGGGTGTGACCCATATGACATCCCGTGACATCGAAGTACAGGGCTTCCGCATCCCTAAG
Seq A exon
GGAACGACACTCATCACCAACCTGTCATCGGTGCTGAAGGATGAGGCCGTCTGGGAGAAGCCCTTCCGCTTCCACCCCGAACACTTCCTGGATGCCCAGGGCCACTTTGTGAAGCCGGAGGCCTTCCTGCCTTTCTCAGCAG
Seq C2 exon
GCCGCCGTGCATGCCTCGGGGAGCCCCTGGCCCGCATGGAGCTCTTCCTCTTCTTCACCTCCCTGCTGCAGCACTTCAGCTTCTCGGTGCCCACTGGACAGCCCCGGCCCAGCCACCATGGTGTCTTTGCTTTCCTGGTGAGCCCATCCCCCTATGAGCTTTGTGCTGTGCCCCGCTAGAATGGGGTACCTAGTCCCCAGCCTGCTCCCTAGCCAGAGGCTCTAATGTACAATAAAGCAATGTGGTAGTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100197-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(18.8=100)
A:
PF0006717=p450=FE(14.2=100)
C2:
PF0006717=p450=PD(11.9=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGATCGACGACGTGAT
R:
GCAGGGAGGTGAAGAAGAGGA
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains