GgaEX1018545 @ galGal4
Exon Skipping
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49271206-49274937:+
Coord C1 exon
chr1:49271206-49271393
Coord A exon
chr1:49272099-49272240
Coord C2 exon
chr1:49272627-49274937
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGTGAATGAGTGCAGGGG
3' ss Score
-0.21
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
Seq A exon
GGGACGACAATCATCACCAACTTGACTTCAGTACTTAAGGATGAGACGGCCTGGAAGAAGCCAAATGAATTTTACCCTGAACACTTTCTGAATGAGAATGGGCAATTTGTGAGACCAGAGGCCTTCTTGCCCTTCTCTGCAG
Seq C2 exon
GTCGACGTGCCTGCCTGGGGGAACAGCTGACCAGGATGGAGCTTTTCATCTTCTTCACCACTCTCATGCAGAAGTTCACCTTTGTGTTCCCTGAAGATCAGCCCAGGCCACGAGAGGACAGTCACTTTGCTTTTACAAACAGTCCACACCCATACCAGTTGCGAGCTGTTCCAAGATAAGTGTGCTCAGCTTCACTCAGAAACCACCAACAGTCAGAAATGTTGCAGAGCTATGCAGATCATGCCAGGTTCTAGACATCCCAAGTCTGTGCAGATGTCCCCAGCTGTTTAAAGTAAGGATGTGGCTCAGTATCCTTAGCTTAGCTTAATTTCAGTTTTAGTCCTGAGTTCCTGCGTATTGAAACACAAAGAGTATCCATGGTAAGAGATAACGTACTGATTCTAAGAGCAAAAAACCTTGGAAAAAACTGTAAAGTGCTGCTGGGCACCTCCCTTCCCTGCTGGCCACTCTCTGCCCCTGGTGCTCTGCCTCTGCCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'8-15,'8-13,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(12.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACAACGCTTTGGGGACG
R:
GCAACTGGTATGGGTGTGGAC
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]