MmuEX7034542 @ mm10
Exon Skipping
Gene
ENSMUSG00000094806 | Cyp2d10
Description
cytochrome P450, family 2, subfamily d, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88602]
Coordinates
chr15:82402846-82403906:-
Coord C1 exon
chr15:82403719-82403906
Coord A exon
chr15:82403197-82403338
Coord C2 exon
chr15:82402846-82403096
Length
142 bp
Sequences
Splice sites
3' ss Seq
AATTATGTGCCTTCTGCCAGGGG
3' ss Score
7.47
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GCAGAGTCCAACAGGAAATCGATGCGGTCATAGGGCAGGTGCGGCATCCAGAGATGGCAGACCAGGCTCGTATGCCCTACACCAATGCTGTCATTCATGAGGTACAGCGCTTTGGGGACATTGCTCCACTGAATTTGCCACGCATCACAAGTCGTGACATTGAAGTGCAGGACTTCCTCATCCCCAAG
Seq A exon
GGGTCAATCCTCATCCCCAACATGTCCTCCGTGCTGAAGGATGAGACTGTCTGGGAAAAGCCCCTCCGCTTCCATCCTGAACACTTCCTCGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
Seq C2 exon
GCCGCAGATCATGCCTGGGTGAGCCCCTGGCCCGCATGGAGCTCTTCCTCTTCTTCACGTGCCTCCTGCAGCACTTTAGCTTCTCAGTGCCCAATGGACAGCCCAGGCCTAGAAACCTTGGTGTCTTTCCTTTTCCGGTTGCCCCCTACCCCTACCAGCTCTGTGCTGTGATGCGTGAGCAAGGACACTAATTCCAGTCATGGTAGGCAGGGCAGGCTGAGCCATGCAAAATAAACCAATCTTGTGGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094806-'1-16,'1-12,11-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(11.9=85.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACAGGAAATCGATGCGG
R:
CAGGAGGCACGTGAAGAAGAG
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types