GgaEX1018545 @ galGal3
Exon Skipping
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51298222-51300399:+
Coord C1 exon
chr1:51298222-51298409
Coord A exon
chr1:51299115-51299256
Coord C2 exon
chr1:51299643-51300399
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGTGAATGAGTGCAGGGG
3' ss Score
-0.21
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
Seq A exon
GGGACGACAATCATCACCAACTTGACTTCAGTACTTAAGGATGAGACGGCCTGGAAGAAGCCAAATGAATTTTACCCTGAACACTTTCTGAATGAGAATGGGCAATTTGTGAGACCAGAGGCCTTCTTGCCCTTCTCTGCAG
Seq C2 exon
GTCGACGTGCCTGCCTGGGGGAACAGCTGACCAGGATGGAGCTTTTCATCTTCTTCACCACTCTCATGCAGAAGTTCACCTTTGTGTTCCCTGAAGATCAGCCCAGGCCACGAGAGGACAGTCACTTTGCTTTTACAAACAGTCCACACCCATACCAGTTGCGAGCTGTTCCAAGATAAGTGTGCTCAGCTTCACTCAGAAACCACCAACAGTCAGAAATGTTGCAGAGCTATGCAGATCATGCCAGGTTCTAGACATCCCAAGTCTGTGCAGATGTCCCCAGCTGTTTAAAGTAAGGATGTGGCTCAGTATCCTTAGCTTAGCTTAATTTCAGTTTTAGTCCTGAGTTCCTGCGTATTGAAACACAAAGAGTATCCATGGTAAGAGATAACGTACTGATTCTAAGAGCAAAAAACCTTGGAAAAAACTGTAAAGTGCTGCTGGGCACCTCCCTTCCCTGCTGGCCACTCTCTGCCCCTGGTGCTCTGCCTCTGCCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(12.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACAACGCTTTGGGGACG
R:
GCAACTGGTATGGGTGTGGAC
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]