GgaEX6046399 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NCU2]
Coordinates
chr9:15148697-15149896:-
Coord C1 exon
chr9:15149709-15149896
Coord A exon
chr9:15149417-15149558
Coord C2 exon
chr9:15148697-15149074
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACAAATGTACTCTTTTTCAGGAC
3' ss Score
9.99
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
AGAAAGTCCATAAGGAGCTGGATGCTGTCCTGGGCAGTTCCCGTTTAATTTGCTACAAAGACAGAAAAAACTTGCCATACACAAATGCTGTGATTCATGAAATCCAACGATACAGTAATATTGTCTTAATTGCACTTCCCAGATATACTGTGAAGGACACGGAGCTGCTGGGATTTCCTATTCCAAAG
Seq A exon
GACACCATCGTTCTGGTAAATATCGACTCTGTTCTGTCTGATCCTGAAAAATGGGAGACACCTGATCAGTTCAACCCGGGACACTTCCTCGATAAAGATGGAAACTTTGTACACAGAGAAGCATTCCTACCATTCTCAATAG
Seq C2 exon
GGCACCGTGCATGCATGGGGGAACTGCTGGCAAGGCTGGAGCTCTTCATCATCTTCTGCACCCTGCTGCAGGCGTTCACCTTCACCCTGCCAGATGGAGTGAACGAAGTCAGCACCAAGTTTGTTTTTTCAAGTACAAAGAAGCCACCTCCACACCAGATCTGTGCCATTCCTCGGTAGGAAACAGTGTCACACAGATTCAGGGAAGACTTAACTCGGTGTGATTCTGCATGTGGAAACTTACTGTGTCTTAAGATTTTTGCTTTCTTCTTGATTTGGTCAGTTACTGCACTGAAAAATGCTTTTCGGACAGTTGCATCCTGTAAAGTCAATATTTTGTTCTTGTTATTAACGCTTGGTATATTTGTCCCAGTGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020738-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.1=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATAAGGAGCTGGATGC
R:
GCAGGGTGCAGAAGATGATGA
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]