DreEX0025420 @ danRer10
Exon Skipping
Gene
ENSDARG00000042956 | cyp2ad6
Description
cytochrome P450, family 2, subfamily AD, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-041001-157]
Coordinates
chr20:25626712-25629014:-
Coord C1 exon
chr20:25628830-25629014
Coord A exon
chr20:25627615-25627756
Coord C2 exon
chr20:25626712-25627017
Length
142 bp
Sequences
Splice sites
3' ss Seq
GATGTATTCCTTCCTTAAAGGGA
3' ss Score
7.03
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAAAGGTGCAAGCAGAGATTGACGAGGTGATTGGTTCCCGTCTTCCTTCTATGTCTGATAAAGCAAACATGCACTACCTGAATGCTTTCATTCATGAGGTCCTCAGGAGAGCAAACCTTGTGCCTCTTAATATGGCTAGAGTTGCAAAAAAGGACACAACTCTGGGGGGCTACTTCATAACAAAG
Seq A exon
GGAACTGTGATGATCACAAACCTGACCTCAGTGCTGTATGACAAACAGGAATGGGAAACACCAGACGCCTTTAACCCTAAACACTTTCTAGACTCAGAGGGCCACTTTTGTAGGAGAAATGCCTTTTTTGCCTTCTCAGCAG
Seq C2 exon
GCAAAAGGCAGTGTCCAGGAGAGTATCTGGCTCACTTGGAGCTGTTCATCTTCCTCACCATCCTCCTGCAGACCTTCAGCTTCAGCCCTCCTGACGGAGAAGAGCCCAGTCTGGACAGTCAGGTGGGCTTCACTCAAGCGCCGCTGCCCTACAAGATCTGCGCTCATCCCAGATGAACACCTGACCATCGACTCTGTGGCATAATGTCTCTGTGGAAAGAATATCGCCCTTATCTGCATTTTACTTATGACTGCATTCTGAGCTTTTAACATTGCAGGCGTGACACTGCATTTTCAGTCACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042956-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=PD(11.9=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATTGGTTCCCGTCTTCC
R:
CTGAAGCTGAAGGTCTGCAGG
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]