MmuEX6094440 @ mm10
Exon Skipping
Gene
ENSMUSG00000052520 | Cyp2j5
Description
cytochrome P450, family 2, subfamily j, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1270149]
Coordinates
chr4:96628773-96634335:-
Coord C1 exon
chr4:96634148-96634335
Coord A exon
chr4:96630711-96630849
Coord C2 exon
chr4:96628773-96629646
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTACCTTCTATAGGGA
3' ss Score
8.45
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAATGTACAGGCGGAGATTGACAGAGTTATTGGCCACAAGAGGCAGGTGAGCTTGTCTGACCGAGAGTCCATGCCCTACACCAATGCTGTCATCCATGAGGTCCAGAGGATGGGCAACATCGTCCCTTTGAATTCTTCCAGGGAAGTTACAGTTGACACCAAGTTTAATGGATTCCACCTGCCAAAG
Seq A exon
GGAACCATGATCCTGACCAATTTGACTGCACTACACAGAGACCCCAAAGAGTGGGCCACTCCAGAAGTGTTCAATCCAGAGCATTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGG
Seq C2 exon
GAAAAAGAGCTTGTCTTGGAGAACAGTTGGCTAAATCTGAGCTGTTCATTTTTTTCTCTGCCCTTATGCAAAAATTTACCTTCAAGCCCCCAATCAATGAGAAGCTGAGCCTGAAGTTCAGAATGGGCCTCATCCTTTCTCCAGCCAGCTACCGAATTTGTGCTATCCCTAGAGTGTGATATCAGAGAAGCGAAAAGAATGTAGAAGTGGAAGAGCTGACATGTGCTATTGAGTCACTGGGGCCTGCTCACATGAGAAGTGATAGGATGAATGTGACTGGGGAAATATGAGAGGACAGAAACTAAAAAATTGGATCCAGTTCCAAGACAACTATTATCTTGATGCTGTCTCTGGACAAATCACCTATGTGTCCAGTGACATACCTTATCATCTAAAGGGTACAGAAAAATGATGATTCTTTGCATAAACAAAGTTCTTATATGAGTCAGAATCAGAGGAAATGGTAAACTAAAAAACGTATCAATAAATAATTAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052520-'13-17,'13-15,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.7=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(11.9=90.0)
Main Skipping Isoform:
ENSMUST00000030299fB8444
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCATCCATGAGGTCCA
R:
TGGAGAAAGGATGAGGCCCAT
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types