BtaEX0000481 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0QW09]
Coordinates
chr3:86538507-86547281:+
Coord C1 exon
chr3:86538507-86538694
Coord A exon
chr3:86542217-86542355
Coord C2 exon
chr3:86547103-86547281
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCTGCCTTCTCCAGGGC
3' ss Score
11.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAAGTCCAAGCTGAGATTGATAGGGTGCTTGGCCAATCTCAGAAACCAAGCATGGCCGCGCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCTGCGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCGCCTGCCCAAG
Seq A exon
GGCACCATGGTCACGACCAACCTGACTGCACTGCACAGGGACCCTGCAGAGTGGGCCACCCCTGACACATTCAATCCAGAGCATTTTCTGGAGAATGGGCAGTTTAAAAAAAGGGAATCCTTTCTGCCTTTTTCAATAG
Seq C2 exon
GAAAGCGGATGTGCCTTGGAGAACAGTTGGCCAGGACTGAGTTGTTTATTTTCTTTACTTCACTTCTGCAAAAATTTACTTTCAGGCCTCCAGAGAATGAGAAGCTGAGCCTGAAGTTCAGAATGAGCATGACCCTCTCCCCGCTCAGCCACCGCCTCTGTGCTATTCCTAGGGCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013693_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=PD(11.9=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAATGGGGAACATCCTC
R:
TAGGAATAGCACAGAGGCGGT
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development