BtaEX0001184 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86392280-86500086:+
Coord C1 exon
chr3:86392280-86392489
Coord A exon
chr3:86410983-86411159
Coord C2 exon
chr3:86499924-86500086
Length
177 bp
Sequences
Splice sites
3' ss Seq
AGTTTTATTTGTTCCATCAGCTC
3' ss Score
5.79
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGTTGGAGGCGTTGGGCTCCCTGGCGGCTGCCCTCTGGGCCGCGCTCCGTCCTGGCACTGTCCTGCTGGGGGCCATCGTCTTTCTCCTCTTGACTGATCTCCTCAACAGGCGGCGTCCAAAGAACTATCCGCCGGGGCCCCCGCGCCTGCCCTTCGTAGGCAACTTCTTCCAACTGGACTTTGAGCAGGGACACCTGTCGCTTCAGCGG
Seq A exon
CTCTACAATGTCTTTCCAAGGATAATGAATTTCCTTCCGGGTCCACACCAAATGCTCTTCAGTAACTGGAGGAAACTGAAAATGTTTGTTGCCCGTGTGATTGAAAACCACAAGAGAGACTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTATCTCCAGGAGACAGAAAAG
Seq C2 exon
GTTGTGAAGAAATATGGGAACATTATTAGGCTAGATTTTGGTGTAATTCATTTCATCGTTATAACTGGATTGCCCTATATCAAAGAAGCCCTTGTCAACCAGGAACAAAACTTTGTAAACCGCCCCATGATACCTCTTCAGAAACATATCTTTAACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085_MULTIEX1-5/18=C1-12
Average complexity
C3
Mappability confidence:
81%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(13.8=37.1)
A:
PF0006717=p450=FE(16.4=100)
C2:
NA
Main Skipping Isoform:
ENSBTAT00000051914fB205
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATCGTCTTTCTCCTCT
R:
TTGTTCCTGGTTGACAAGGGC
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development