MmuEX6094429 @ mm10
Exon Skipping
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96529385-96535606:-
Coord C1 exon
chr4:96535446-96535606
Coord A exon
chr4:96531632-96531808
Coord C2 exon
chr4:96529385-96529523
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATCTTATTTTTCCTAACCAGCTG
3' ss Score
8.05
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGACTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTACTGGACGAGGTTATGTATTTGGAGACAACAATGATTAGTCAG
Seq A exon
CTGTATAATATTTTTCCATGGATAATGAAATACATCCCTGGATCACATCAAAAAGTTTTCAGAAACTGGGAAAAACTGAAATTGTTTGTCTCTTGTATGATTGATGATCACCGGAAAGACTGGAACCCCGATGAACCAAGAGACTTCATTGATGCTTTCCTCAAGGAAATGACAAAG
Seq C2 exon
TACCCAGAGAAGACTACAAGTTTCAATGAAGAAAACCTTATCTGCAGCACTTTGGACCTCTTCTTTGCTGGAACAGAGACAACATCAACTACATTACGCTGGGCTCTGCTCTACATGGCCCTCTACCCAGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914-'6-6,'6-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
ENSMUST00000030303fB1175
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCTGTCACCTTTGGGG
R:
GACTTCTGGGTAGAGGGCCAT
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types