GgaEX0016339 @ galGal3
Exon Skipping
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27479600-27481485:-
Coord C1 exon
chr8:27481325-27481485
Coord A exon
chr8:27479988-27480164
Coord C2 exon
chr8:27479600-27479732
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTCTTTCCAAAGCTG
3' ss Score
9.01
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAGTCAATAATGCTGTTTCAAACATCATCTGCTCTGTCACCTTTGGCAACCGGTTTGAATATCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGAACGAGACTGCTATCCTCCAAGGGAAGATAATGAGTCAG
Seq A exon
CTGTACAACTTTTTTCCGTCCGTAATAAAATACTTCCCTGGATCCCACCAAACCGTTATCAAAAACGGGAGGCTCATGAAAAGGTTTGTGTGCAAGAAGATCAGCAAACATAAGGAAGACCTGAGCCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
Seq C2 exon
CCCAACGGGAGAGATTTCTGTGAGGATAACCTGGTGGCGTGCACTCTCGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATCCGCTGGGCCCTGCTGTATATGGCCATATATCCAGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(12.8=100),PF035209=KCNQ_channel=WD(100=89.8)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCCTTTCAACCCTCACCT
R:
CAGCGGATGGTTGTAGAGGTG
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]