DreEX0025423 @ danRer10
Exon Skipping
Gene
ENSDARG00000042956 | cyp2ad6
Description
cytochrome P450, family 2, subfamily AD, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-041001-157]
Coordinates
chr20:25629150-25633641:-
Coord C1 exon
chr20:25633479-25633641
Coord A exon
chr20:25629383-25629559
Coord C2 exon
chr20:25629150-25629291
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGCTTTCCAGCTG
3' ss Score
9.69
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGATTGAGAAGTATGGGAACATATTCAGTGTCAGGATTGGAAGTGATAAAATAGTGTATGTGTCTGGGTTTAAAATGGTGAAGGATGTTTTGATCACTCAAGGGGAAAACTTCACTGACCGTCCTGTTTCACCATTGTTTGACACACTTTATAAAGGCAGAG
Seq A exon
CTGTATGATGCCTTCCCAGGTATAATGAAGTGGGTGCCTGGACCTCATCAGACAATCATTTCAAACTATCAAAAGTTAGCAAACTTTCTGGAAGAGAAGATTGAGCAACATAAACCAGACTGGGACATCAGCAATCCGAGAGATTATATTGATGCCTACCTAACCGAAGCAGAGAAG
Seq C2 exon
AAGAAGAATGATACAGAGGCAGGGTTTACTGTTGGCAGTTTGGTGTGGTCCATGGTGGATTTGTTTGAGGGGGGAACTGAAACAACAACCAACACACTCCGATGGGCTCTGCTTTTCCTCATCAAGTACCCTGACATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042956_MULTIEX1-3/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTCAGGATTGGAAGTGA
R:
CCATCGGAGTGTGTTGGTTGT
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]