MmuEX1007896 @ mm10
Exon Skipping
Gene
ENSMUSG00000081225 | Cyp2j12
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:96112866-96121597:-
Coord C1 exon
chr4:96121437-96121597
Coord A exon
chr4:96115517-96115693
Coord C2 exon
chr4:96112866-96113007
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTTCTTTATAAGCTC
3' ss Score
6.83
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GACAGCCTTTTGACCCTCACTTCAAGATCAACAGTGCAGTTTCCAACATCATTTGCACCTTTGCCTTTGGGGAGCGCTTTGAGTATGAGGACAGTCACTTTCATGAGTTGCTGAGGTTATTAGATGAAGCCACGTGTTTGGAGGCATCAATGATGTGCCAA
Seq A exon
CTCTACAATGTCTTTCCATCCATAATTCAATATGTTCCTGGATCACATCAAACAGTTTTGAGAAACTGGGAAAAACTGAAATTGTTTATTTACCAAATGATGGAGAGTCACCGGAAAGATTGGAATCCTGATGAACCGAGAGACTTCATTGATGCTTTCCTTACAGAAATGTCAAAG
Seq C2 exon
TACGGAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCAACAGCACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACAACTAACACACTGCGCTGGGCTCTGCTCTACATAACTACAAACCCAGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGTGCAGTTTCCAACA
R:
TATGTAGAGCAGAGCCCAGCG
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types