BtaEX0001180 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86407772-86411159:+
Coord C1 exon
chr3:86407772-86407932
Coord A exon
chr3:86410374-86410493
Coord C2 exon
chr3:86410983-86411159
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATGTTTGCACAGAGA
3' ss Score
7.65
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GACAGCCTTTCAACCCTCACTTCAAAATCAACAATGCTGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGGTTTGACTACCAGGATGATCAGTTCCAGGAGCTGCTGAGGCTGCTGGATGAGGTCACCTACTTAGAGACAACAGTGTGGTGCCAG
Seq A exon
AGACCAATGGGGCTGGACTGGAAAGAGTAAGGGAGAGCAAGATGGCAGGGAGTCATAGGAGAGGAGGCGCCAGGAGGGTGAGGGGCCAGATCATGTAGAGCTCCCGGCCAGGAGAATGAG
Seq C2 exon
CTCTACAATGTCTTTCCAAGGATAATGAATTTCCTTCCGGGTCCACACCAAATGCTCTTCAGTAACTGGAGGAAACTGAAAATGTTTGTTGCCCGTGTGATTGAAAACCACAAGAGAGACTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTATCTCCAGGAGACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.0=100)
A:
PF0006717=p450=PD(1.6=30.0)
C2:
PF0006717=p450=FE(16.4=100)
Main Inclusion Isoform:
ENSBTAT00000051914fB205
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTCCATCACCTTCGGG
R:
GCTTCAGCAGGATTCCAGTCT
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development