GgaEX0017894 @ galGal4
Exon Skipping
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49264035-49267630:+
Coord C1 exon
chr1:49264035-49265124
Coord A exon
chr1:49266613-49266784
Coord C2 exon
chr1:49267478-49267630
Length
172 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTATCTGGGTAGTTT
3' ss Score
6.54
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GGTCTCAGATCCGAATTTGGCAAAGAGGTGGAGGAGGAAAAGGATTGGCCCTCATCACCACTCCCCCAACGCTGAGCTGAAAGGAGGAGGAGCTCTGGATCCATGCCAAATTCCATGTTTAAAAGTCAGCAACAACAGGGAGAGGGGAGCAGGAGGCAGAAAAAGAAGACGTGAGGAAGAGGAGGAAGCAAGAGAAAGAGGGCAGCTGCCCGGGGAGGGGAGCAGGAGAAAGGAGGCAGAAGCGAAGGACAGAAACAGTGCTGAGTCAAAACAGGAAGACCAAGGAGTAGACAAACTACAAAATGACACTGCTCCTGTGGCTGTCATCTTGGAGCAACATCTCTGTACTGGGAGTTTTTCTTACTGTCTTTACCATACTTGTTGATTTCATGAAGCGCAGAAAGAAGTGGAGCCGTTACCCCCCAGGCCCAATGCCACTGCCGTTTGTTGGGACCATGCCATACGTTAATTACTACAACCCGCATCTCTCCTTCGAGAAG
Seq A exon
TTTCGCAAGAAGTTTGGAAACATTTTCAGTCTCCAGAACTGCTGGACCAATGTGGTAGTGCTGAATGGGTACAAAACTGTGAAGGAAGCCCTGGTCAACAAATCAGAGGACTTTGCTGACCGGCCATACATGCCAGTATATGAACATCTGGGCTATGGACATAAATCTGAAG
Seq C2 exon
GGCTTGTTTTGGCAAGATATGGACATCTCTGGAAAGAGCTAAGGAAATTCACGCTCACTACCCTGAGGAATTTTGGGATGGGAAAGAAGTCCTTGGAAGAGCGAGTGACTGAGGAAGCAGGATTTTTGTGCTCTGCAATCAGTTCTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=39.4)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCATCTTGGAGCAACA
R:
ATTCCTCAGGGTAGTGAGCGT
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]