GgaEX0017894 @ galGal3
Exon Skipping
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51291826-51294646:+
Coord C1 exon
chr1:51291826-51292140
Coord A exon
chr1:51293629-51293800
Coord C2 exon
chr1:51294494-51294646
Length
172 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTATCTGGGTAGTTT
3' ss Score
6.54
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AAGCAAGAGAAAGAGGGCAGCTGCCCGGGGAGGGGAGCAGGAGAAAGGAGGCAGAAGCGAAGGACAGAAACAGTGCTGAGTCAAAACAGGAAGACCAAGGAGTAGACAAACTACAAAATGACACTGCTCCTGTGGCTGTCATCTTGGAGCAACATCTCTGTACTGGGAGTTTTTCTTACTGTCTTTACCATACTTGTTGATTTCATGAAGCGCAGAAAGAAGTGGAGCCGTTACCCCCCAGGCCCAATGCCACTGCCGTTTGTTGGGACCATGCCATACGTTAATTACTACAACCCGCATCTCTCCTTCGAGAAG
Seq A exon
TTTCGCAAGAAGTTTGGAAACATTTTCAGTCTCCAGAACTGCTGGACCAATGTGGTAGTGCTGAATGGGTACAAAACTGTGAAGGAAGCCCTGGTCAACAAATCAGAGGACTTTGCTGACCGGCCATACATGCCAGTATATGAACATCTGGGCTATGGACATAAATCTGAAG
Seq C2 exon
GGCTTGTTTTGGCAAGATATGGACATCTCTGGAAAGAGCTAAGGAAATTCACGCTCACTACCCTGAGGAATTTTGGGATGGGAAAGAAGTCCTTGGAAGAGCGAGTGACTGAGGAAGCAGGATTTTTGTGCTCTGCAATCAGTTCTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=38.8)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCATCTTGGAGCAACA
R:
ATTCCTCAGGGTAGTGAGCGT
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]