GgaEX0025858 @ galGal3
Exon Skipping
Gene
ENSGALG00000018634 | E1C4W1_CHICK
Description
NA
Coordinates
chr8:27465490-27467415:-
Coord C1 exon
chr8:27467255-27467415
Coord A exon
chr8:27465867-27466043
Coord C2 exon
chr8:27465490-27465622
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTCTTTCCAAAGCTG
3' ss Score
9.04
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACGTCATCTGCTCCATCACCTTTGGCAATAGGTTTGAGTACCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGGGAAGATAATGAGCCAG
Seq A exon
CTGTACACATTTTTCCCCTCCATAGTAAAGTACCTCCCTGGATCCCACCAAACAGTTATCAAAAATGGGAAGCTCATGAAAGATTTTGTGTGCAATGTGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
Seq C2 exon
CCCGACAGCAGTGATTTCTGTGAGGATAACCTGGTGTCGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATTCGCTGGGCCCTGCTGTTTATGGCCATGTATCCAGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTTCAAACGTCATCTGC
R:
ACATGGCCATAAACAGCAGGG
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]