RnoEX6022482 @ rn6
Exon Skipping
Gene
ENSRNOG00000030466 | Cyp2j16
Description
cytochrome P450, family 2, subfamily j, polypeptide 16 [Source:RGD Symbol;Acc:1561242]
Coordinates
chr5:119479128-119491579:-
Coord C1 exon
chr5:119491419-119491579
Coord A exon
chr5:119480639-119480815
Coord C2 exon
chr5:119479128-119479269
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTCTTTATAAGCTC
3' ss Score
8.15
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GACAGCCATTTGACCCTCACTTCAGGATCAACAATGCAGTTTCCAATATCATTTGCTCCATCACCTTTGGGGAGCGCTTTGAGTATGATGACAGTCAGTTTCAAGAGCTGCTGAAGTTAGCAGATGAGGTCATATGTTCTGAGGCATCAATGACATCAGTG
Seq A exon
CTCTACAATGTCTTTCCACTCATATTTAAATATCTTCCTGGACCACATCAAACAGTTTTTAAAAACTGGGAGAAACTGAAATCGATTGTTGCAAATATGATAGACCGTCACAGAAAAGACTGGAATCCTGATGAGCCGAGAGACTTCGTTGATGCTTTCCTGACAGAAATGACAAAG
Seq C2 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAATCTCATCGCTACCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCCACAACATTGCGCTGGGCTCTGCTCTACATTACGCTCAACCCAGAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030466-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCCATCACCTTTGGGG
R:
TTGTACTTCTGGGTTGAGCGT
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]