MmuEX1007904 @ mm10
Exon Skipping
Gene
ENSMUSG00000082932 | Cyp2j8
Description
cytochrome P450, family 2, subfamily j, polypeptide 8 [Source:MGI Symbol;Acc:MGI:2449817]
Coordinates
chr4:96475416-96499693:-
Coord C1 exon
chr4:96499533-96499693
Coord A exon
chr4:96479013-96479189
Coord C2 exon
chr4:96475416-96475557
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTTTTCTTCTTAAGCTC
3' ss Score
8.19
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GACGGCCTTTTGACCCTCACTTCATGATCAATAATGCAGTTTCCAATATCATTTGTTCCATCACTATTGGGGAACGTTTTGAGTATGAAGACAATCAGTTTCAGGAGCTACTGAAGTTAGCAGATGAGACCCTGTGTTTGGAGGCATCAAAGGTGTTAATG
Seq A exon
CTCTACAATGTCTTTCCATCTATATTTAAATATCTTCCTGGACCACATCAAAAACTTTTCAGCAACTGGGAAAAACTGAAATTGTTTTTTTCCCATGTGATGGACAGTCACCGGAAAGATTGGAATCCTTCTGCACCAAGAGACTTCATTGATGCTTTCCTTACAGAAATGGCAAAG
Seq C2 exon
TACTCAGACAAGACAACTACAAGTTTTAATGAAGAAAATCTCATCTGCACCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCCACAGCACTGCGTTGGGCTCTGCTCTACATAACTGTTAATCCAGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000082932-'3-9,'3-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTTTGACCCTCACTTCA
R:
GCAGTGCTGTGGATGTTGTCT
Band lengths:
258-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types