BtaEX6082500 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50448077-50452122:-
Coord C1 exon
chr18:50451960-50452122
Coord A exon
chr18:50450078-50450227
Coord C2 exon
chr18:50448077-50448237
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGACCCTGAAATCCTGGCAGGTG
3' ss Score
7.52
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
CTCAAGGAGAAATACGGTCCAGTCTTCACTGTGTACATGGGGCCCCGGCCAGTGGTTGTTTTATGTGGACATGAAGCAGTGAAGGAGGCCCTGGTAGACCGAGCAGATGAGTTCAGTGGCCGTGGAGAACTGGCTTCAGTAGAGCGAAACTTCCAAGGTCATG
Seq A exon
GTGTAGCACTGGCTAATGGAGAACGATGGAGGATTCTCCGACGCTTCTCCCTGACCATTCTTCGGGACTTCGGGATGGGAAAGAGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTTCCTACTAGTGGAATTACGCAAGACCAGGG
Seq C2 exon
GGGCTCGCATCGAACCTACTTTCTTCCTGAGCCGCACTGTCTCCAACGTCATCAGTTCCGTCGTCTTTGGAAGCCGCTTTGACTATGAGGACCAGCAGTTCCTGAAGTTGCTGCAAATGATCAACCAGAGTTTCATAGAAATGAGCACATCCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGCAGTGAAGGAGGCC
R:
GCCCAGGATGTGCTCATTTCT
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]