DreEX0025430 @ danRer10
Exon Skipping
Gene
ENSDARG00000102981 | cyp2k16
Description
cytochrome P450, family 2, subfamily K, polypeptide16 [Source:ZFIN;Acc:ZDB-GENE-041010-37]
Coordinates
chr3:12618223-12620323:+
Coord C1 exon
chr3:12618223-12618385
Coord A exon
chr3:12618981-12619130
Coord C2 exon
chr3:12620163-12620323
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAAGTTAATCATCTTTGTAGGAA
3' ss Score
5.1
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATGGCAAAGCAGTTCGGCCCAGTTTTTAAAGTCTACTTTGGTCCGAAGAAAGTGGTTGTGCTTGCCGGCTACAAAGCAGTGAAGCAAGCGCTTGTTAATTATGCAGAAGCATTTGGAGACAGAGAAATCATGCCACTTTTCCATGATTTCACCAAAGGTCATG
Seq A exon
GAATAATATTTGCCAATGGAGAGAGCTGGAGAGAGATGAGACGGTTTGCTCTCACCAATTTACGAGACTTTGGGATGGGAAAGAAAAAAATTGAGGAGAAAATCATCGAGGAAACATGCCATTTACGAGAGGAGTTTGAGAAGTTTGAAG
Seq C2 exon
GAAAGCCTTTTGAAACCGCACAACTCATGAACTATGCAGCTTCAAGTGTCATCTCCTCCATTGTGTATGGCCGCAGATTCGAGTATACAGATCCTCAGCTACGGACCATGGTGGATCGAGCTAATGAGAGCGTCAGACTGAGTGGATCAGCATCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102981-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTTGCCGGCTACAAAG
R:
TGATCCACTCAGTCTGACGCT
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]