BtaEX6082507 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50421973-50423775:-
Coord C1 exon
chr18:50423613-50423775
Coord A exon
chr18:50422367-50422516
Coord C2 exon
chr18:50421973-50422133
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCGCTGCCTCCTCAGGCG
3' ss Score
9.04
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATCAGCGAGCACTACGGCCCTGTGTTCACGGTCCACCTGGGGACCCGGCAGATTGTGGTGCTGTGTGGCTATGATGCTGTGAAGGAGGCTCTGGTGGACCAGGCTGAAGAATTCAGTGGGCGAGGCAAGCAGGCTACCTTTGACTGGCTCTTCAAAGGCTATG
Seq A exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCGATTACAACTCTGCGGGACTTCGGCGTGGGCAAGCGCGGCATCGAAGAGCGCATCCAGGAGGAGGCGGGCTTCCTCATCGAGGCCTTCCGGGGCACTCGCG
Seq C2 exon
GCGCCTTCATCGATCCCACCTTCTTCCTGAGCCGAACGGTCTCCAATGTCATCAGCTCCATTGTCTTCGGGGACCGCTTTGACTACGAGGACAAAGAGTTCTTGTCACTACTGCGAATGATGCTGGGAAGCTTCCAGTTCACCGCTACGTCTACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(12.3=100)
C2:
PF0006717=p450=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTGGCTATGATGCTG
R:
GACGTAGCGGTGAACTGGAAG
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]