DreEX0025471 @ danRer10
Exon Skipping
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25655578-25657273:+
Coord C1 exon
chr20:25655578-25655740
Coord A exon
chr20:25655813-25655962
Coord C2 exon
chr20:25657113-25657273
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATGTCTCGCGACAGGTC
3' ss Score
9.4
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
ATGTCGGACCACTATGGCAACATATTCAGCTTGCGTCTGGGAAGCTTAAACACAGTTGTTGTGAACACCTACAGTATGGTGAAGAAAGTTCTTAATGACCAGGGCAACTCTTTCATGTACCGCCCAGTCAATGATATCACCGAAAGAATATCCAAGTGCCAAG
Seq A exon
GTCTAACCTTTAATAATGGCTACAGCTGGAAGCAACATAGGCGTTTTACTCTAAGTACTCTTAAATTCTTTGGTGTGGGAAAGAGAAGCCTGGAATTCATCATCATGGAGGAGTACAAATTCTTGCACCAGTCCATCATGGATACCAATG
Seq C2 exon
GGCTGCCATTCAACCCTCATTACATCATTAACAATGGCGTCTCCAACATCATCTGCTCTATGGTGTTTGGAAGAAGGTTTGAATACACTGACCAGAGGTTTCTGAACATGCTCAGTCTGATTTCTAAAGCCCTTAAACTACAAACGTCTGTGTTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485_MULTIEX1-3/8=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGCTTGCGTCTGGGAAG
R:
ACTGAGCATGTTCAGAAACCTCT
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]