BtaEX6082509 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50418488-50420631:-
Coord C1 exon
chr18:50420455-50420631
Coord A exon
chr18:50419368-50419509
Coord C2 exon
chr18:50418488-50418675
Length
142 bp
Sequences
Splice sites
3' ss Seq
GAAGCCCTCCATCCATGCAGGAG
3' ss Score
5.31
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCTACGAGATGTTCTACTCAGTGATGAAATATCTGCCAGGGCCACAGCAACAGGCCTTTAAGGAGCTGCAGGGACTGGAGGACTTCATAGCCAAGAAGGTGGAACAAAACCAGCGCACGCTGGACCCCAACTCCCCACGGGACTTCATCGACTCCTTCCTCATCCGCATGCAGGAG
Seq A exon
GAGAAGGAGAATCCCAACACGGAGTTCTACAGGAAGAACCTGGTGATGACAACACTGAACCTCTTCTTTGCGGGCACCGAGACGGTCAGCACGACCATGCGGTATGGCTTCCTGCTGCTCATGAAGCACCCAGATGTGGAGG
Seq C2 exon
CCAAAATCCATGAGGAGATTGACCGCGTGATCGGCAAGAACCGTCAGCCCAAGTTTGAGGACCGAGCCAAGATGCCCTACACAGAGGCTGTGATCCACGAGATCCAGAGATTCGGAGACATGATCCCCATGGGCTTGGCTCGCAGAGTCACCAAGGATACCAAGTTTCGAGACTTCCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815-'8-16,'8-11,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.3=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAGGAGCTGCAGGGAC
R:
AAGCCCATGGGGATCATGTCT
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]